ATP:Mg2+ shapes material properties of protein-RNA condensates and their partitioning of clients

Type of content
Journal Article
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Degree name
Publisher
Elsevier BV
Journal Title
Journal ISSN
Volume Title
Language
eng
Date
2022
Authors
André AAM
van Haren MHI
Nelissen FHT
Jonker A
Spruijt E
Yewdall, N. Amy
Abstract

Many cellular condensates are heterotypic mixtures of proteins and RNA formed in complex environments. Magnesium ions (Mg2+) and ATP can impact RNA folding, and local intracellular levels of these factors can vary significantly. However, the effect of ATP:Mg2+ on the material properties of protein-RNA condensates is largely unknown. Here, we use an in vitro condensate model of nucleoli, made from nucleophosmin 1 (NPM1) proteins and ribosomal RNA (rRNA), to study the effect of ATP:Mg2+. While NPM1 dynamics remain unchanged at increasing Mg2+ concentrations, the internal RNA dynamics dramatically slowed until a critical point, where gel-like states appeared, suggesting the RNA component alone forms a viscoelastic network that undergoes maturation driven by weak multivalent interactions. ATP reverses this arrest and liquefies the gel-like structures. ATP:Mg2+ also influenced the NPM1-rRNA composition of condensates and enhanced the partitioning of two clients: an arginine-rich peptide and a small nuclear RNA. By contrast, larger ribosome partitioning shows dependence on ATP:Mg2+ and can become reversibly trapped around NPM1-rRNA condensates. Lastly, we show that dissipative enzymatic reactions that deplete ATP can be used to control the shape, composition, and function of condensates. Our results illustrate how intracellular environments may regulate the state and client partitioning of RNA-containing condensates.

Description
Citation
Yewdall NA, André AAM, van Haren MHI, Nelissen FHT, Jonker A, Spruijt E (2022). ATP:Mg<sup>2+</sup> shapes material properties of protein-RNA condensates and their partitioning of clients. Biophysical Journal. 121(20). 3962-3974.
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ANZSRC fields of research
Fields of Research::31 - Biological sciences::3101 - Biochemistry and cell biology::310103 - Cell metabolism
Fields of Research::31 - Biological sciences::3101 - Biochemistry and cell biology::310109 - Proteomics and intermolecular interactions (excl. medical proteomics)
Rights
Copyright 2022 Biophysical Society. This is an open access article under the CC BY-NC-ND license (http:// creativecommons.org/licenses/by-nc-nd/4.0/).