Inferring parameters for a lattice-free model of cell migration and proliferation using experimental data

Type of content
Journal Article
Thesis discipline
Degree name
Publisher
Elsevier BV
Journal Title
Journal ISSN
Volume Title
Language
English
Date
2018
Authors
Browning, Alexander P.
McCue, S.W.
Binny, R.N.
Plank, Michael J.
Shah, E.T.
Simpson, Matthew J.
Abstract

© 2017 Elsevier Ltd Collective cell spreading takes place in spatially continuous environments, yet it is often modelled using discrete lattice-based approaches. Here, we use data from a series of cell proliferation assays, with a prostate cancer cell line, to calibrate a spatially continuous individual based model (IBM) of collective cell migration and proliferation. The IBM explicitly accounts for crowding effects by modifying the rate of movement, direction of movement, and the rate of proliferation by accounting for pair-wise interactions. Taking a Bayesian approach we estimate the free parameters in the IBM using rejection sampling on three separate, independent experimental data sets. Since the posterior distributions for each experiment are similar, we perform simulations with parameters sampled from a new posterior distribution generated by combining the three data sets. To explore the predictive power of the calibrated IBM, we forecast the evolution of a fourth experimental data set. Overall, we show how to calibrate a lattice-free IBM to experimental data, and our work highlights the importance of interactions between individuals. Despite great care taken to distribute cells as uniformly as possible experimentally, we find evidence of significant spatial clustering over short distances, suggesting that standard mean-field models could be inappropriate.

Description
Citation
Browning AP, McCue SW, Binny RN, Plank MJ, Shah ET, Simpson MJ (2018). Inferring parameters for a lattice-free model of cell migration and proliferation using experimental data. Journal of Theoretical Biology. Volume 437, 21 January 2018, Pages 251-260
Keywords
Individual based model, Cell migration, Model calibration, Cell proliferation assay, Approximate Bayesian computation
Ngā upoko tukutuku/Māori subject headings
ANZSRC fields of research
Fields of Research::49 - Mathematical sciences::4901 - Applied mathematics::490102 - Biological mathematics
Rights
Creative Commons Attribution Non-Commercial No Derivatives License