Defining a phylogenetic tree with the minimum number of r-state characters

Type of content
Journal Article
Thesis discipline
Degree name
Publisher
University of Canterbury. Mathematics and Statistics
Journal Title
Journal ISSN
Volume Title
Language
Date
2015
Authors
Bordewich, M.
Semple, C.
Abstract

Semple and Steel (2002) showed that if T is a phylogenetic X-tree and C is a collection of r-state characters that defines T , then |C| >[(n 􀀀 3)/(r - 1)], where n = [X]. In this paper, we show that, provided n is sufficiently large, this lower bound is sharp. Furthermore, we show that, for all n > 13, there exists a collection of 4-state characters of size [(n - 3)/3] that defines T , but there is a phylogenetic X-tree with n = 12 which is not de ned by any set of 3 characters.

Description
Citation
Bordewich, M., Semple, C. (2015) Defining a phylogenetic tree with the minimum number of r-state characters. SIAM Journal on Discrete Mathematics, 29(2), pp. 835-853.
Keywords
Phylogenetic tree, r-state character, chordal graph
Ngā upoko tukutuku/Māori subject headings
ANZSRC fields of research
Fields of Research::49 - Mathematical sciences::4901 - Applied mathematics::490102 - Biological mathematics
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