Semple, C.Steel, M. A.2016-03-102016-03-1020041172-8531http://hdl.handle.net/10092/11879Graphs obtained from a binary leaf labelled ('phylogenetic') tree by adding an edge so as to introduce a cycle provide a useful representation of hybrid evolution in biology. This class of graphs (which we call 'phylogenetic clocks') also has some attractive combinatorial properties, which we present. We characterize when a set of binary phylogenetic trees is displayed by a phylogenetic clock in terms of tree rearrangement operations. This leads to a triple-wise compatibility theorem, and a simple, fast algorithm to determine clock compatibility. We also use generating function techniques to provide closed-form expressions that enumerate phylogenetic clocks with specified or unspecified cycle length.enAll Rights ReservedDiscussion / Working PapersFields of Research::49 - Mathematical sciences::4901 - Applied mathematics::490102 - Biological mathematics