Optimizing phylogenetic diversity across two trees

Type of content
Journal Article
Thesis discipline
Degree name
Publisher
University of Canterbury. Mathematics and Statistics
Journal Title
Journal ISSN
Volume Title
Language
Date
2009
Authors
Bordewich, M.
Semple, C.
Spillner, A.
Abstract

We present a polynomial-time algorithm for finding an optimal set of taxa that maximizes the weighted sum of the phylogenetic diversity across two phylogenetic trees. This resolves one of the challenges proposed as part of the Phylogenetics Programme held at the Isaac Newton Institute for Mathematical Sciences (Cambridge, 2007). It also completely closes the gap between optimizing phylogenetic diversity on one tree, which is known to be in P, and optimizing phylogenetic diversity across three or more trees, which is known to be NP-hard.

Description
Citation
Bordewich, M., Semple, C., Spillner, A. (2009) Optimizing phylogenetic diversity across two trees. Applied Mathematics Letters, 22(5), pp. 638-641.
Keywords
Phylogenetic diversity
Ngā upoko tukutuku/Māori subject headings
ANZSRC fields of research
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