On the Computational Complexity of the Rooted Subtree Prune and Regraft Distance

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Journal Article
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Publisher
University of Canterbury. Mathematics and Statistics.
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Date
2004
Authors
Bordewich, M.
Semple, C.
Abstract

The graph-theoretic operation of rooted subtree prune and regraft is increasingly being used as a tool for understanding and modelling reticu- lation events in evolutionary biology. In this paper, we show that computing the rooted subtree prune and regraft distance between two rooted binary phy- logenetic trees on the same label set is NP-hard. This resolves a longstanding open problem. Furthermore, we show that this distance is fixed parameter tractable when parameterised by the distance between the two trees.

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Citation
Bordewich, M., Semple, C. (2004) On the Computational Complexity of the Rooted Subtree Prune and Regraft Distance. Annals of Combinatorics, 8(4), pp. 409-423.
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