Unicyclic Networks: Compatibility and Enumeration

Type of content
Journal Article
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Publisher
University of Canterbury. Mathematics and Statistics.
Journal Title
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Volume Title
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Date
2006
Authors
Semple, C.
Steel, M.
Abstract

Graphs obtained from a binary leaf labelled (‘phylogenetic’) tree by adding an edge so as to introduce a cycle provide a useful representation of hybrid evolution in molecular evolutionary biology. This class of graphs (which we call ‘unicyclic networks’) also has some attractive combinatorial properties, which we present. We characterize when a set of binary phylogenetic trees is displayed by a unicyclic network in terms of tree rearrangement operations. This leads to a triple-wise compatibility theorem, and a simple, fast algorithm to determine 1-cycle compatibility. We also use generating function techniques to provide closed-form expressions that enumerate unicyclic networks with specified or unspecified cycle length, and we provide an extension to enumerate a class of multi-cyclic networks.

Description
Citation
Semple, C., Steel, M. (2006) Unicyclic Networks: Compatibility and Enumeration. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 3(1), pp. 84-91.
Keywords
phylogenetic tree, compatibility, circular orderings, generating function, galled-trees
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