Background: It is generally acknowledged that the 17-segment AHA model provides a suitable approximation for mapping the results of X-ray angiography onto myocardial anatomy in a consistent way in the absence of a more exact method. In practice, coronary anatomy varies from patient to patient which is acknowledged as the main limitation of the AHA model. The aim of this study was to establish whether the generation of a patient-specific coronary artery to perfusion segment map improved diagnosis of myocardial ischaemia.